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Biocipse 2.2.0 Release Candidate 1

Biocipse 2.2.0 Release Candidate 1 is now available from the bioclipse-devel release site.

Bioclipse 2.1.1 devel release available

A new development release is now available for download at http://pele.farmbio.uu.se/bioclipse-devel/. Highlights of the development update site (http://update2-devel.bioclipse.net) are:

Bioinformatics, with the new Sequence Editor now capable of wrapping sequences
Bioclipse Reporting (BIRT)
QSAR, supporting local, REST, and XMPP services
Semantic web features (RDF and Pellet)
StructureDB: A chemical database for Bioclipse
The new VScreen feature for Virtual Screening
The new Decision Support feature
The new MetaPrint2D feature

Note that the development versions are not compatible with the stable 2.0.x release branch which is available from Sourceforge. This update replaces the 2.1.0 devel release, and the devel update site is only compatible with the 2.1.1 release.

Bioclipse development releases

Bioclipse is a large and fast moving project. Stable releases are available from Sourceforge, but new functionality might only be available from one of the recent Development Releases. Note that development releases may also include functionality which should be considered stable, but moving a release to Sourceforge requires much more testing, and is only done at certain intervals.

Bioclipse 2.0 released

We are proud to announce the release of Bioclipse 2.0. Bioclipse is a free, open source workbench for the life sciences that provides advanced functionality mainly in cheminformatics (bioinformatics is planned for version 2.1 later this summer). Some major components include a brand new chemical editor for SWT (JChemPaint), interactive 3D visualization of molecules (Jmol), a Molecules Table capable of reading large files, and a powerful backbone in cheminformatics provided by the Chemistry Development Kit (CDK) library.

Here is the full announcement.

Bioclipse awarded at Trophees du Libre

Ola Spjuth and Georg Greve

At the international contest for free software, Trophees du Libre, 2007 which was held in Soissons, France, Bioclipse was awarded the Special Prize of the jury. The prize was handed over by the president of the Free Software Foundation Europe, Georg Greve, who also was the chairman of the jury and gave the following motivation:
“Bioclipse is breaking new ground by integrating different research areas in life science and making the tools available as Free Software for everyone. It is the jury’s expectation that the project will have major impact in the future of life science research and education.”

Michel Lara, Program Manager at the Paris Innovation Center of IBM France and member of the Jury explains: "Bioclipse is an innovative project with high potential. The jury was completely united in the decision that Bioclipse should receive the Special Prize".

Bioclipse project leader Ola Spjuth represented Bioclipse on the occasion.

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Bioclipse publication online

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